Synthesis,characterization and molecular docking of new C,N‐palladacycles containing pyridinium‐derived ligands: DNA and BSA interaction studies and evaluation as anti‐tumor agents

Four new monomeric Pd (II) complexes with formulas [Pd(C,N)‐(2′‐NH₂C₆H₄)C₆H₄ (N₃)(L)] ( A ), ( B ) and [Pd(C,N)‐C₆H₄CH₂NH(C₄H₉)(N₃)(L)] ( C ), ( D ), [L = isonicotinamide for ( A ) and ( C ), L = 4‐N,N‐dimethylaminopyridine for ( B ) and ( D )] have been synthesized using four initial dimers [Pd₂{(C,N)‐(2′‐NH₂C₆H₄)C₆H₄}₂(μ‐OAc)₂] ( 1 ), [Pd₂{(C,N)‐ (2′‐NH₂C₆H₄)C₆H₄}₂(μ‐N₃)₂] ( 3 ) for A and C , and [Pd₂{(C,N)‐C₆H₄CH₂NH(C₄H₉)}₂(μ‐OAc)₂] ( 2 ) and [Pd₂{(C,N)‐C₆H₄CH₂NH(C₄H₉)}₂(μ‐N₃)₂] ( 4 ) for B and D . Then synthesized complexes have been characterized by Fourier transform‐infrared, NMR spectroscopy and thermal gravimetric‐differential thermal analysis. Furthermore, UV–Vis spectroscopy, fluorescence spectroscopy, circular dichroism (CD) and helix melting temperature measurements have been employed to study the binding interaction of them with calf thymus‐deoxyribonucleic acid (DNA). The results reveal that all synthesized complexes can interact with DNA via groove‐binding mode. Bovine serum albumin (BSA)‐binding studies have been carried out using UV–Vis spectroscopy, emission titration and CD. However, competitive binding studies using warfarin, ibuprofen and digoxin on site markers demonstrated that the complexes bind to different sites on BSA. The results also indicated that the binding site was mainly located within site‐III for complex A , and site‐I for complexes B , C and D of BSA. In addition, molecular docking studies have been executed to determine the binding site of the DNA and BSA with complexes. Eventually, in vitro cytotoxicity of synthesized palladium complexes and cisplatin were carried out against human promyelocytic leukemia cancer (Hela) and breast cancer (MCF‐7) cell lines. Pursuant to the IC₅₀ values, the cytotoxicity of complexes against MCF‐7 was more than Hela.     

Classical limit of the tensor product of holomorphic discrete series representations

For three coadjoint orbits \(\mathcal {O}_1, \mathcal {O}_2\) and \(\mathcal {O}_3\) in \(\mathfrak {g}^*\) , the Corwin–Greenleaf function \(n(\mathcal {O}_1 \times \mathcal {O}_2, \mathcal {O}_3)\) is given by the number of \(G\) -orbits in \(\{(\lambda , \mu ) \in \mathcal {O}_1 \times \mathcal {O}_2 \, : \, \lambda + \mu \in \mathcal {O}_3 \}\) under the diagonal action. In the case where \(G\) is a simple Lie group of Hermitian type, we give an explicit formula of \(n(\mathcal {O}_1 \times \mathcal {O}_2, \mathcal {O}_3)\) for coadjoint orbits \(\mathcal {O}_1\) and \(\mathcal {O}_2\) that meet \(\left( [\mathfrak {k}, \mathfrak {k}] + \mathfrak {p}\right) ^{\perp }\) , and show that the formula is regarded as the ‘classical limit’ of a special case of Kobayashi’s multiplicity-free theorem (Progr. Math. 2007) in the branching law to symmetric pairs.     

Effect of morphology of thin DNA films on the electron stimulated desorption of anions

We present a comparison between the electron stimulated desorption (ESD) of anions from DNA samples prepared by lyophilization (an example of poorly organized or nonuniform films) and molecular self-assembly (well-ordered films). The lyophilization (or freeze- drying) method is perhaps the most frequently employed technique for forming DNA films for studies of low-energy electron (LEE) interactions leading to DNA damage; however, this technique usually produces nonuniform films with considerable clustering which may affect DNA configuration and enhance sample charging when the film is irradiated. Our results confirm the general validity of ESD measurements obtained with lyophilized samples, but also reveal limitations of lyophilization for LEE studies on DNA films. Specifically we observe some modulation of structures, associated with dissociative electron attachment, in the anion yield functions from different types of DNA film, confirming that conformational factors play a role in the LEE induced damage to DNA.     

Ab Initio Calculations of the Conformational Preferences of 1,3-Oxathiane S-Oxide and its Analogs Containing S and SE Atoms—Evidence for Stereoelectronic Interactions Associated with the Anomeric Effects

Abstract

Stereoelectronic interactions associated with the AE and also the conformational and structural properties of 1,3-oxathiane S-oxide (1), 1,3-dithiane S-oxide (2), 1,3-thiaselenane S-oxide (3), 1,3-oxaselenane Se-oxide (4), 1,3-thiaselenane Se-oxide (5), and 1,3-diselenane Se-oxide (6) were investigated using quantum mechanical methods. These compounds were fully optimized at the B3LYP/6 – 311 + G** and HF/6 – 311 + G** levels of theory. The Gibbs Free Energy, Enthalpy, and Entropy differences (i.e., ΔG, ΔH, and ΔS) between the axial and equatorial conformations were calculated at the B3LYP/6 – 311 + G** and HF/6 – 311 + G** levels of theory. The decrease of the AE is corresponding to the decreases of calculated Δ(G _ax – G _eq) value of the above mentioned compounds. The calculated AE values are more significant for the justification of the conformational dominances of the compounds than steric effects. In this work, the relations between the Anomeric Effects, donor and acceptor orbital energies, occupancies, structural parameters, dipole–dipole interactions, and conformational behavior of the compounds have been studied.     

Two-grid finite element method for the dual-permeability-Stokes fluid flow model

In this paper, two-grid finite element method for the steady dual-permeability-Stokes fluid flow model is proposed and analyzed. Dual-permeability-Stokes interface system has vast applications in many areas such as hydrocarbon recovery process, especially in hydraulically fractured tight/shale oil/gas reservoirs. Two-grid method is popular and convenient to solve a large multiphysics interface system by decoupling the coupled problem into several subproblems. Herein, the two-grid approach is used to reduce the coding task substantially, which provides computational flexibility without losing the approximate accuracy. Firstly, we solve a global problem through standard P_k ? P_k??1 ? P_k ? P_k finite elements on the coarse grid. After that, a coarse grid solution is applied for the decoupling between the interface terms and the mass exchange terms to solve three independent subproblems on the fine grid. The three independent parallel subproblems are the Stokes equations, the microfracture equations, and the matrix equations, respectively. Four numerical tests are presented to validate the numerical methods and illustrate the features of the dual-permeability-Stokes model.

     

A redox series of aluminum complexes: characterization of four oxidation states including a ligand biradical state stabilized via exchange coupling

Electrophilic activation and subsequent reduction of substrates is in general not possible because highly Lewis acidic metals lack access to multiple redox states. Herein, we demonstrate that transition metal-like redox processes and electronic structure and magnetic properties can be imparted to aluminum(III). Bis(iminopyridine) complexes containing neutral, monoanionic, and dianionic iminopyridine ligands (IP) have been characterized structurally and electronically; yellow (IP)AlCl(3) (1), deep green (IP(-))(2)AlCl (2) and (IP(-))(2)Al(CF(3)SO(3)) (3), and deep purple [(IP(2-))Al](-) (5) are presented. The mixed-valent, monoradical complex (IP(-))(IP(2-))Al is unstable toward C-C coupling, and [(IP(2-))Al](2-)(μ-IP-IP)(2-) (4) has been isolated. Variable-temperature magnetic susceptibility and EPR spectroscopy measurements indicate that the biradical character of the ligand-based triplet in 2 is stabilized by strong antiferromagnetic exchange coupling mediated by aluminum(III): J = -230 cm(-1) for ? = -2J(?(L(1))·?(L(2))). Coordination geometry-dependent (IP(-))-(IP(-)) communication through aluminum(III) is observed electrochemically. The cyclic voltammogram of trigonal bipyramidal 2 displays successive ligand-based oxidation events for the two IP(1-/0) processes, at -0.86 and -1.20 V vs SCE. The 0.34 V spacing between redox couples corresponds to a conproportionation constant of K(c) = 10(5.8) for the process (IP(-))(2)AlCl + (IP)(2)AlCl → 2(IP(-))(IP)AlCl consistent with Robin and Day Class II mixed-valent behavior. Tetrahedral 5 displays localized, Class I behavior as indicated by closely spaced redox couples. Furthermore, CV's of 2 and 5 indicate that changes in the coordination environment of the aluminum center shift the potentials for the IP(1-/0) and IP(2-/1-) redox couples by up to 0.9 V.     

Enhanced antibacterial performance of hybrid semiconductor nanomaterials: ZnO/SnO2 nanocomposite thin films

The nano-sized coupled oxides ZnO/SnO₂ thin films in a molar ratio of 2:1 (Z2S), 1:1 (ZS) and 1:2 (ZS2) were prepared using sol-gel dip coating method and characterized with X-ray diffraction (XRD), scanning electron microscopy (SEM) and UV-vis spectroscopy. Escherichia coli (E. coli, ATCC 25922) was selected as a model for the Gram-negative bacteria to evaluate antibacterial property of composite samples compared with single ZnO (Z) and single SnO₂ (S) films. The antibacterial activity has been studied applying the so-called antibacterial drop test under UV illumination. The bactericidal activity was estimated by relative number of bacteria survived calculated from the number of viable cells which form colonies on the nutrient agar plates. The influence of the SnO₂-ZnO nanocomposite composition on the structural features and on the antibacterial properties of the thin films are reported and discussed. It is found that all coatings exhibited a high antibacterial activity. The coupled oxide photocatalyst Z2S has better photocatalytic activity to bacteria inactivation than ZS, ZS2, Z and S films. Furthermore, nanostructured films were active even in the absence of irradiation.     

Modeling and optimization of simultaneous degradation of rhodamine B and acid red 14 binary solution by homogeneous Fenton reaction: a chemometrics approach

This study aimed to propose a mathematical method to investigate and optimize the simultaneous elimination process of multiple organic pollutants using the Fenton process. Hence, the treatment of rhodamine B (RB) and acid red 14 (AR14) dyes in their binary solution was studied. Multivariate curve resolution alternating least square (MCR-ALS), a novel chemometric method, was applied along with correlation constraints to resolute the UV-Vis spectrophotometric data, enabling quantification of investigated dyes despite a high spectral overlapping. Response surface methodology was adopted to assess the model and optimize individual and interactive effects of three independent factors (Fe²⁺, H₂O₂ and initial pH) on the simultaneous elimination of RB and AR14. The values of the regression coefficient for RB and AR14 were determined as 98.48 and 98.67 percent, respectively, revealing the reliability of the obtained polynomial models to predict decolorization efficiencies. Desirability function was employed to optimize the independent variables to attain the highest possible degradation performance for both dyes in their binary solution. At the optimum point of operation ([Fe²⁺] = 143.88 mg/L, [H₂O₂] = 126.89 mg/L and pH = 3.71), degradation efficiencies of RB and AR14 were found as 81.58% and 80.22%, respectively, which were nearly identical to the experimental results.     

A Cheap and Efficient Methodology for the Solvent‐Free,One‐pot and Multi‐component Synthesis of 3,4‐Dihydropyrimidin‐2(1H)‐ones Catalyzed by Mesoporous NH4H2PO4/MCM‐48 and Comparison of Its Catalytic Efficacy with NH4H2PO4/MCM‐41

The catalytic efficiency of ammonium dihydrogenphosphate was evaluated in the two heterogeneous forms of NH₄H₂PO₄/MCM‐48 and NH₄H₂PO₄/MCM‐41, as mesoporous catalysts, in the solvent free synthesis of 3,4‐dihydropyrimidin‐2(1H)‐ones through one‐pot three‐component condensation of ethyl acetoacetate, an aryl aldehyde and urea. Different reaction parameters including catalytic efficacy, solvent effect, and urea concentration are considered.